Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_HJ2-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HJ2-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HJ2-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HJ2-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72587018 total, 63987 skipped (flags/unmapped)
Fragments: 36380324 total (36098667 tlen-paired, 4294 hash-paired, 351 singletons, 16008 discordant, 261004 orphans, 11869 too large [>5000 bp], 14075349 duplicates)
Reads: 78525990 total, 49939 skipped (flags/unmapped)
Fragments: 39359198 total (39076975 tlen-paired, 3604 hash-paired, 440 singletons, 11430 discordant, 266749 orphans, 12422 too large [>5000 bp], 14838744 duplicates)
Reads: 78133282 total, 55431 skipped (flags/unmapped)
Fragments: 39166446 total (38849366 tlen-paired, 4228 hash-paired, 317 singletons, 13899 discordant, 298636 orphans, 21956 too large [>5000 bp], 15152492 duplicates)
Reads: 85817316 total, 85426 skipped (flags/unmapped)
Fragments: 43095512 total (42386786 tlen-paired, 2431 hash-paired, 417 singletons, 135573 discordant, 570305 orphans, 55794 too large [>5000 bp], 16714872 duplicates)