Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_eGK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_eGK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eGK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eGK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71803135 total, 55740 skipped (flags/unmapped)
Fragments: 35991039 total (35717928 tlen-paired, 2718 hash-paired, 328 singletons, 15326 discordant, 254739 orphans, 10192 too large [>5000 bp], 13953367 duplicates)
Reads: 76832288 total, 47303 skipped (flags/unmapped)
Fragments: 38513361 total (38241054 tlen-paired, 2293 hash-paired, 398 singletons, 10271 discordant, 259345 orphans, 9003 too large [>5000 bp], 14581366 duplicates)
Reads: 84080113 total, 52914 skipped (flags/unmapped)
Fragments: 42149256 total (41823726 tlen-paired, 6086 hash-paired, 318 singletons, 15385 discordant, 303741 orphans, 16373 too large [>5000 bp], 16359037 duplicates)
Reads: 84630653 total, 80273 skipped (flags/unmapped)
Fragments: 42507633 total (41797324 tlen-paired, 1761 hash-paired, 345 singletons, 133246 discordant, 574957 orphans, 55208 too large [>5000 bp], 16518716 duplicates)