Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3E1-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3E1-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3E1-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3E1-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81078503 total, 62332 skipped (flags/unmapped)
Fragments: 40667383 total (40301246 tlen-paired, 2986 hash-paired, 428 singletons, 15746 discordant, 346977 orphans, 14405 too large [>5000 bp], 17906242 duplicates)
Reads: 85724241 total, 51332 skipped (flags/unmapped)
Fragments: 43008704 total (42629234 tlen-paired, 2682 hash-paired, 388 singletons, 10521 discordant, 365879 orphans, 10884 too large [>5000 bp], 18453808 duplicates)
Reads: 94810821 total, 59109 skipped (flags/unmapped)
Fragments: 47568216 total (47116419 tlen-paired, 5237 hash-paired, 356 singletons, 16118 discordant, 430086 orphans, 22861 too large [>5000 bp], 20956633 duplicates)
Reads: 96140414 total, 90963 skipped (flags/unmapped)
Fragments: 48379329 total (47285255 tlen-paired, 2518 hash-paired, 371 singletons, 211727 discordant, 879458 orphans, 85311 too large [>5000 bp], 21271209 duplicates)