Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7TS-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7TS-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7TS-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7TS-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90815106 total, 71257 skipped (flags/unmapped)
Fragments: 45533151 total (45151442 tlen-paired, 4006 hash-paired, 402 singletons, 22872 discordant, 354429 orphans, 16189 too large [>5000 bp], 19259965 duplicates)
Reads: 96509364 total, 56298 skipped (flags/unmapped)
Fragments: 48393752 total (48017198 tlen-paired, 2733 hash-paired, 408 singletons, 15417 discordant, 357996 orphans, 11983 too large [>5000 bp], 20024558 duplicates)
Reads: 107475773 total, 65681 skipped (flags/unmapped)
Fragments: 53893916 total (53430451 tlen-paired, 4671 hash-paired, 350 singletons, 24130 discordant, 434314 orphans, 28462 too large [>5000 bp], 22939449 duplicates)
Reads: 108231664 total, 100560 skipped (flags/unmapped)
Fragments: 54380771 total (53418749 tlen-paired, 3789 hash-paired, 419 singletons, 180537 discordant, 777277 orphans, 73629 too large [>5000 bp], 23199237 duplicates)