Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_bMa-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_bMa-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 659_bMa-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bMa-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74646634 total, 62745 skipped (flags/unmapped)
Fragments: 37449522 total (37091670 tlen-paired, 3243 hash-paired, 312 singletons, 16342 discordant, 337955 orphans, 11556 too large [>5000 bp], 16009435 duplicates)
Reads: 79987064 total, 55214 skipped (flags/unmapped)
Fragments: 40136411 total (39736097 tlen-paired, 3360 hash-paired, 297 singletons, 14286 discordant, 382371 orphans, 20848 too large [>5000 bp], 17228760 duplicates)
Reads: 79554636 total, 53273 skipped (flags/unmapped)
Fragments: 39917122 total (39547450 tlen-paired, 3043 hash-paired, 418 singletons, 11530 discordant, 354681 orphans, 11109 too large [>5000 bp], 16709216 duplicates)
Reads: 88274881 total, 90667 skipped (flags/unmapped)
Fragments: 44422380 total (43392651 tlen-paired, 1977 hash-paired, 453 singletons, 203994 discordant, 823305 orphans, 81606 too large [>5000 bp], 19069687 duplicates)