Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6SE-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6SE-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6SE-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6SE-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86724548 total, 71447 skipped (flags/unmapped)
Fragments: 43464829 total (43136079 tlen-paired, 3774 hash-paired, 471 singletons, 19417 discordant, 305088 orphans, 14501 too large [>5000 bp], 18824582 duplicates)
Reads: 92251648 total, 60519 skipped (flags/unmapped)
Fragments: 46237926 total (45911185 tlen-paired, 3018 hash-paired, 505 singletons, 13216 discordant, 310002 orphans, 12892 too large [>5000 bp], 19643176 duplicates)
Reads: 102762688 total, 67101 skipped (flags/unmapped)
Fragments: 51507327 total (51111001 tlen-paired, 4717 hash-paired, 365 singletons, 20184 discordant, 371060 orphans, 26179 too large [>5000 bp], 22486345 duplicates)
Reads: 103930238 total, 103113 skipped (flags/unmapped)
Fragments: 52186023 total (51356951 tlen-paired, 3527 hash-paired, 453 singletons, 155902 discordant, 669190 orphans, 62361 too large [>5000 bp], 22796906 duplicates)