Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_HRY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HRY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HRY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HRY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72141560 total, 52966 skipped (flags/unmapped)
Fragments: 36153427 total (35898304 tlen-paired, 3463 hash-paired, 304 singletons, 13492 discordant, 237864 orphans, 9954 too large [>5000 bp], 14498254 duplicates)
Reads: 76884175 total, 47095 skipped (flags/unmapped)
Fragments: 38531713 total (38274751 tlen-paired, 2954 hash-paired, 421 singletons, 9186 discordant, 244401 orphans, 9238 too large [>5000 bp], 15019819 duplicates)
Reads: 84759424 total, 76999 skipped (flags/unmapped)
Fragments: 42562792 total (41884605 tlen-paired, 2390 hash-paired, 347 singletons, 127328 discordant, 548122 orphans, 52655 too large [>5000 bp], 17079020 duplicates)
Reads: 84487727 total, 50444 skipped (flags/unmapped)
Fragments: 42346290 total (42034764 tlen-paired, 5533 hash-paired, 284 singletons, 13494 discordant, 292215 orphans, 18601 too large [>5000 bp], 16940357 duplicates)