Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_gK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_gK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_gK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_gK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70265421 total, 59908 skipped (flags/unmapped)
Fragments: 35214164 total (34957852 tlen-paired, 2876 hash-paired, 319 singletons, 17139 discordant, 235978 orphans, 6741 too large [>5000 bp], 13330417 duplicates)
Reads: 76764487 total, 49354 skipped (flags/unmapped)
Fragments: 38467512 total (38213880 tlen-paired, 3506 hash-paired, 304 singletons, 11969 discordant, 237853 orphans, 9133 too large [>5000 bp], 14357597 duplicates)
Reads: 83953187 total, 56740 skipped (flags/unmapped)
Fragments: 42075775 total (41760068 tlen-paired, 5039 hash-paired, 320 singletons, 18109 discordant, 292239 orphans, 18728 too large [>5000 bp], 16146397 duplicates)
Reads: 84426726 total, 88411 skipped (flags/unmapped)
Fragments: 42369032 total (41763215 tlen-paired, 3225 hash-paired, 339 singletons, 111087 discordant, 491166 orphans, 45878 too large [>5000 bp], 16315889 duplicates)