Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6HR-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6HR-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6HR-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6HR-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87947779 total, 64637 skipped (flags/unmapped)
Fragments: 44067067 total (43776120 tlen-paired, 2941 hash-paired, 417 singletons, 15094 discordant, 272495 orphans, 10960 too large [>5000 bp], 18248924 duplicates)
Reads: 92997858 total, 57031 skipped (flags/unmapped)
Fragments: 46598399 total (46300318 tlen-paired, 4441 hash-paired, 496 singletons, 11159 discordant, 281985 orphans, 13255 too large [>5000 bp], 18838776 duplicates)
Reads: 103470782 total, 99198 skipped (flags/unmapped)
Fragments: 51937898 total (51160491 tlen-paired, 3231 hash-paired, 408 singletons, 146384 discordant, 627384 orphans, 61790 too large [>5000 bp], 21564855 duplicates)
Reads: 102867905 total, 59725 skipped (flags/unmapped)
Fragments: 51547757 total (51207279 tlen-paired, 5187 hash-paired, 382 singletons, 15469 discordant, 319440 orphans, 16244 too large [>5000 bp], 21380606 duplicates)