Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_zO-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_zO-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_zO-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_zO-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71795490 total, 50645 skipped (flags/unmapped)
Fragments: 36010537 total (35674377 tlen-paired, 3365 hash-paired, 298 singletons, 13536 discordant, 318961 orphans, 21515 too large [>5000 bp], 14703730 duplicates)
Reads: 66925038 total, 55985 skipped (flags/unmapped)
Fragments: 33561951 total (33268278 tlen-paired, 3161 hash-paired, 345 singletons, 15185 discordant, 274982 orphans, 10239 too large [>5000 bp], 13611975 duplicates)
Reads: 72133316 total, 47561 skipped (flags/unmapped)
Fragments: 36175018 total (35875791 tlen-paired, 2914 hash-paired, 432 singletons, 10510 discordant, 285371 orphans, 10761 too large [>5000 bp], 14364708 duplicates)
Reads: 78957290 total, 84073 skipped (flags/unmapped)
Fragments: 39691979 total (38895601 tlen-paired, 3494 hash-paired, 349 singletons, 154385 discordant, 638150 orphans, 63879 too large [>5000 bp], 16252652 duplicates)