Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_75R-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_75R-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_75R-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_75R-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69155875 total, 51034 skipped (flags/unmapped)
Fragments: 34669803 total (34403932 tlen-paired, 2381 hash-paired, 258 singletons, 11133 discordant, 252099 orphans, 8796 too large [>5000 bp], 14332533 duplicates)
Reads: 72949887 total, 44824 skipped (flags/unmapped)
Fragments: 36574810 total (36299732 tlen-paired, 2590 hash-paired, 390 singletons, 7867 discordant, 264231 orphans, 10032 too large [>5000 bp], 14645912 duplicates)
Reads: 81037570 total, 48083 skipped (flags/unmapped)
Fragments: 40628632 total (40316757 tlen-paired, 4253 hash-paired, 276 singletons, 11341 discordant, 296005 orphans, 14252 too large [>5000 bp], 16755370 duplicates)
Reads: 81464074 total, 74762 skipped (flags/unmapped)
Fragments: 40950107 total (40158058 tlen-paired, 2258 hash-paired, 330 singletons, 152229 discordant, 637232 orphans, 63330 too large [>5000 bp], 16894143 duplicates)