Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_b7Z-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b7Z-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b7Z-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b7Z-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71130766 total, 53066 skipped (flags/unmapped)
Fragments: 35657131 total (35381707 tlen-paired, 3056 hash-paired, 356 singletons, 14764 discordant, 257248 orphans, 10521 too large [>5000 bp], 13915385 duplicates)
Reads: 75753089 total, 47120 skipped (flags/unmapped)
Fragments: 37975678 total (37698153 tlen-paired, 3835 hash-paired, 341 singletons, 9835 discordant, 263514 orphans, 9234 too large [>5000 bp], 14456414 duplicates)
Reads: 84025358 total, 74519 skipped (flags/unmapped)
Fragments: 42215192 total (41481870 tlen-paired, 2571 hash-paired, 301 singletons, 138266 discordant, 592184 orphans, 56470 too large [>5000 bp], 16561511 duplicates)
Reads: 83486666 total, 49759 skipped (flags/unmapped)
Fragments: 41858178 total (41529648 tlen-paired, 2913 hash-paired, 285 singletons, 14622 discordant, 310710 orphans, 15773 too large [>5000 bp], 16395198 duplicates)