Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BKVL-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BKVL-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BKVL-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BKVL-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70124326 total, 57687 skipped (flags/unmapped)
Fragments: 35171142 total (34854753 tlen-paired, 3478 hash-paired, 330 singletons, 13200 discordant, 299381 orphans, 12033 too large [>5000 bp], 14747595 duplicates)
Reads: 73574435 total, 48796 skipped (flags/unmapped)
Fragments: 36911445 total (36584423 tlen-paired, 2176 hash-paired, 435 singletons, 9017 discordant, 315394 orphans, 9289 too large [>5000 bp], 15068629 duplicates)
Reads: 81729965 total, 51661 skipped (flags/unmapped)
Fragments: 41003302 total (40618387 tlen-paired, 2963 hash-paired, 293 singletons, 13740 discordant, 367919 orphans, 19956 too large [>5000 bp], 17160075 duplicates)
Reads: 82629405 total, 82949 skipped (flags/unmapped)
Fragments: 41579346 total (40629245 tlen-paired, 4289 hash-paired, 322 singletons, 183194 discordant, 762296 orphans, 75191 too large [>5000 bp], 17370587 duplicates)