Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_ILF-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ILF-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ILF-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ILF-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79343801 total, 59564 skipped (flags/unmapped)
Fragments: 39793096 total (39450140 tlen-paired, 3482 hash-paired, 365 singletons, 14941 discordant, 324168 orphans, 11289 too large [>5000 bp], 17780932 duplicates)
Reads: 94273443 total, 87819 skipped (flags/unmapped)
Fragments: 47422308 total (46401032 tlen-paired, 3065 hash-paired, 384 singletons, 196991 discordant, 820836 orphans, 81114 too large [>5000 bp], 21224595 duplicates)
Reads: 83875960 total, 51894 skipped (flags/unmapped)
Fragments: 42072238 total (41715335 tlen-paired, 2727 hash-paired, 471 singletons, 10048 discordant, 343657 orphans, 11859 too large [>5000 bp], 18336676 duplicates)
Reads: 93239377 total, 54896 skipped (flags/unmapped)
Fragments: 46774470 total (46356619 tlen-paired, 4884 hash-paired, 363 singletons, 15458 discordant, 397146 orphans, 16525 too large [>5000 bp], 20929668 duplicates)