Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2JW-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_2JW-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_2JW-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_2JW-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65474704 total, 47616 skipped (flags/unmapped)
Fragments: 32820234 total (32576467 tlen-paired, 2420 hash-paired, 316 singletons, 13057 discordant, 227974 orphans, 7455 too large [>5000 bp], 12465571 duplicates)
Reads: 69962764 total, 44676 skipped (flags/unmapped)
Fragments: 35073728 total (34800548 tlen-paired, 5258 hash-paired, 289 singletons, 11766 discordant, 255867 orphans, 13394 too large [>5000 bp], 13347294 duplicates)
Reads: 70501784 total, 40627 skipped (flags/unmapped)
Fragments: 35340950 total (35092152 tlen-paired, 2654 hash-paired, 368 singletons, 9269 discordant, 236507 orphans, 8066 too large [>5000 bp], 13078202 duplicates)
Reads: 77510193 total, 68674 skipped (flags/unmapped)
Fragments: 38929458 total (38281176 tlen-paired, 3169 hash-paired, 322 singletons, 125554 discordant, 519237 orphans, 51081 too large [>5000 bp], 14834763 duplicates)