Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_ePR-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ePR-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_ePR-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ePR-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Reads: 54220290 total, 44479 skipped (flags/unmapped)
Fragments: 27174226 total (26974018 tlen-paired, 2121 hash-paired, 245 singletons, 11772 discordant, 186070 orphans, 6837 too large [>5000 bp], 10727216 duplicates)
Reads: 58572582 total, 35630 skipped (flags/unmapped)
Fragments: 29356936 total (29158518 tlen-paired, 1933 hash-paired, 243 singletons, 8095 discordant, 188147 orphans, 5735 too large [>5000 bp], 11427181 duplicates)
Reads: 65107757 total, 65873 skipped (flags/unmapped)
Fragments: 32688853 total (32176518 tlen-paired, 2259 hash-paired, 263 singletons, 96182 discordant, 413631 orphans, 39036 too large [>5000 bp], 13133900 duplicates)
Reads: 64632580 total, 41555 skipped (flags/unmapped)
Fragments: 32397140 total (32157673 tlen-paired, 2714 hash-paired, 220 singletons, 11892 discordant, 224641 orphans, 10803 too large [>5000 bp], 12970209 duplicates)