Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5FY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_5FY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_5FY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5FY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72597891 total, 54394 skipped (flags/unmapped)
Fragments: 36402120 total (36098209 tlen-paired, 2855 hash-paired, 344 singletons, 17889 discordant, 282823 orphans, 11212 too large [>5000 bp], 14869992 duplicates)
Reads: 77519382 total, 48266 skipped (flags/unmapped)
Fragments: 38867876 total (38564807 tlen-paired, 2978 hash-paired, 427 singletons, 12485 discordant, 287179 orphans, 11485 too large [>5000 bp], 15504648 duplicates)
Reads: 78434873 total, 48615 skipped (flags/unmapped)
Fragments: 39331416 total (38992016 tlen-paired, 2788 hash-paired, 300 singletons, 15312 discordant, 321000 orphans, 22363 too large [>5000 bp], 16117967 duplicates)
Reads: 86533495 total, 75482 skipped (flags/unmapped)
Fragments: 43479032 total (42709683 tlen-paired, 2872 hash-paired, 392 singletons, 148110 discordant, 617975 orphans, 59158 too large [>5000 bp], 17824749 duplicates)