Count mode: frac
Count mode: frac
[W::hts_idx_load3] Count mode: frac
The index file is older than the data file: 1136_4CH-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4CH-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4CH-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4CH-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68306044 total, 47048 skipped (flags/unmapped)
Fragments: 34279056 total (33949427 tlen-paired, 2658 hash-paired, 334 singletons, 8391 discordant, 318246 orphans, 9732 too large [>5000 bp], 14092739 duplicates)
Reads: 65030533 total, 54362 skipped (flags/unmapped)
Fragments: 32633011 total (32309372 tlen-paired, 3263 hash-paired, 331 singletons, 12217 discordant, 307828 orphans, 9154 too large [>5000 bp], 13802066 duplicates)
Reads: 76952654 total, 79043 skipped (flags/unmapped)
Fragments: 38755606 total (37763595 tlen-paired, 3243 hash-paired, 381 singletons, 192869 discordant, 795518 orphans, 79149 too large [>5000 bp], 16346925 duplicates)
Reads: 76185044 total, 51044 skipped (flags/unmapped)
Fragments: 38238037 total (37844261 tlen-paired, 4688 hash-paired, 308 singletons, 12646 discordant, 376134 orphans, 17184 too large [>5000 bp], 16143552 duplicates)