Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_06R-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_06R-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_06R-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_06R-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75989831 total, 54260 skipped (flags/unmapped)
Fragments: 38072493 total (37820195 tlen-paired, 3199 hash-paired, 350 singletons, 16778 discordant, 231971 orphans, 11453 too large [>5000 bp], 13561164 duplicates)
Reads: 81291478 total, 48344 skipped (flags/unmapped)
Fragments: 40731585 total (40458342 tlen-paired, 4957 hash-paired, 361 singletons, 14412 discordant, 253513 orphans, 16919 too large [>5000 bp], 14587328 duplicates)
Reads: 82700205 total, 42897 skipped (flags/unmapped)
Fragments: 41436650 total (41187381 tlen-paired, 1749 hash-paired, 492 singletons, 12146 discordant, 234882 orphans, 9691 too large [>5000 bp], 14415589 duplicates)
Reads: 89424089 total, 71976 skipped (flags/unmapped)
Fragments: 44864772 total (44287774 tlen-paired, 2750 hash-paired, 386 singletons, 107161 discordant, 466701 orphans, 44828 too large [>5000 bp], 16122097 duplicates)