Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6DX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6DX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6DX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6DX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71979065 total, 54300 skipped (flags/unmapped)
Fragments: 36074424 total (35805424 tlen-paired, 3381 hash-paired, 324 singletons, 16390 discordant, 248905 orphans, 12573 too large [>5000 bp], 13400960 duplicates)
Reads: 77585931 total, 43221 skipped (flags/unmapped)
Fragments: 38886414 total (38623656 tlen-paired, 2740 hash-paired, 455 singletons, 10652 discordant, 248911 orphans, 9624 too large [>5000 bp], 14167298 duplicates)
Reads: 85345116 total, 73212 skipped (flags/unmapped)
Fragments: 42854771 total (42183824 tlen-paired, 1816 hash-paired, 423 singletons, 126145 discordant, 542563 orphans, 52674 too large [>5000 bp], 16045483 duplicates)
Reads: 84861235 total, 49875 skipped (flags/unmapped)
Fragments: 42538747 total (42207864 tlen-paired, 3716 hash-paired, 284 singletons, 15799 discordant, 311084 orphans, 22617 too large [>5000 bp], 15893235 duplicates)