Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_e0S-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e0S-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e0S-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e0S-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 112114794 total, 94006 skipped (flags/unmapped)
Fragments: 56182177 total (55775858 tlen-paired, 5316 hash-paired, 557 singletons, 27609 discordant, 372837 orphans, 14914 too large [>5000 bp], 21941459 duplicates)
Reads: 123795620 total, 72805 skipped (flags/unmapped)
Fragments: 62033174 total (61634616 tlen-paired, 3895 hash-paired, 647 singletons, 20322 discordant, 373694 orphans, 15404 too large [>5000 bp], 23990445 duplicates)
Reads: 120724600 total, 83778 skipped (flags/unmapped)
Fragments: 60497740 total (60032565 tlen-paired, 7461 hash-paired, 488 singletons, 24948 discordant, 432278 orphans, 39054 too large [>5000 bp], 23891485 duplicates)
Reads: 131969063 total, 125045 skipped (flags/unmapped)
Fragments: 66217552 total (65316161 tlen-paired, 6230 hash-paired, 534 singletons, 164001 discordant, 730626 orphans, 70037 too large [>5000 bp], 26250498 duplicates)