Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5PU-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5PU-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5PU-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5PU-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82709317 total, 63312 skipped (flags/unmapped)
Fragments: 41446556 total (41156772 tlen-paired, 3072 hash-paired, 356 singletons, 15285 discordant, 271071 orphans, 12160 too large [>5000 bp], 16242342 duplicates)
Reads: 88095096 total, 50938 skipped (flags/unmapped)
Fragments: 44146998 total (43860489 tlen-paired, 2701 hash-paired, 562 singletons, 10758 discordant, 272488 orphans, 11606 too large [>5000 bp], 16991913 duplicates)
Reads: 97543731 total, 81532 skipped (flags/unmapped)
Fragments: 48977770 total (48215388 tlen-paired, 1551 hash-paired, 438 singletons, 144048 discordant, 616345 orphans, 61721 too large [>5000 bp], 19288427 duplicates)
Reads: 97339793 total, 63526 skipped (flags/unmapped)
Fragments: 48781899 total (48428252 tlen-paired, 4455 hash-paired, 440 singletons, 16367 discordant, 332385 orphans, 22647 too large [>5000 bp], 19179771 duplicates)