Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_egp-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_egp-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_egp-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_egp-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85066697 total, 61475 skipped (flags/unmapped)
Fragments: 42633124 total (42332215 tlen-paired, 3826 hash-paired, 530 singletons, 13129 discordant, 283424 orphans, 11464 too large [>5000 bp], 17487234 duplicates)
Reads: 91262108 total, 53897 skipped (flags/unmapped)
Fragments: 45742915 total (45412716 tlen-paired, 2941 hash-paired, 353 singletons, 11447 discordant, 315458 orphans, 19096 too large [>5000 bp], 18767671 duplicates)
Reads: 91050714 total, 49937 skipped (flags/unmapped)
Fragments: 45636412 total (45331675 tlen-paired, 3374 hash-paired, 484 singletons, 9302 discordant, 291577 orphans, 10007 too large [>5000 bp], 18277444 duplicates)
Reads: 100600055 total, 84144 skipped (flags/unmapped)
Fragments: 50527151 total (49677630 tlen-paired, 2678 hash-paired, 452 singletons, 167212 discordant, 679179 orphans, 70620 too large [>5000 bp], 20770942 duplicates)