Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6NT-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_6NT-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_6NT-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6NT-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67474068 total, 46397 skipped (flags/unmapped)
Fragments: 33819314 total (33574538 tlen-paired, 2830 hash-paired, 300 singletons, 15351 discordant, 226295 orphans, 7819 too large [>5000 bp], 11847979 duplicates)
Reads: 72208743 total, 41805 skipped (flags/unmapped)
Fragments: 36187415 total (35945169 tlen-paired, 3105 hash-paired, 363 singletons, 10953 discordant, 227825 orphans, 10148 too large [>5000 bp], 12442572 duplicates)
Reads: 79198295 total, 60954 skipped (flags/unmapped)
Fragments: 39762494 total (39175860 tlen-paired, 2628 hash-paired, 294 singletons, 107055 discordant, 476657 orphans, 44652 too large [>5000 bp], 14013801 duplicates)
Reads: 79020895 total, 43954 skipped (flags/unmapped)
Fragments: 39604394 total (39316763 tlen-paired, 4163 hash-paired, 283 singletons, 15407 discordant, 267778 orphans, 18107 too large [>5000 bp], 13935434 duplicates)