Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_283-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_283-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_283-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_283-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61428710 total, 44618 skipped (flags/unmapped)
Fragments: 30773351 total (30582650 tlen-paired, 3384 hash-paired, 342 singletons, 10151 discordant, 176824 orphans, 7278 too large [>5000 bp], 11318761 duplicates)
Reads: 65888201 total, 37643 skipped (flags/unmapped)
Fragments: 33007545 total (32817819 tlen-paired, 2501 hash-paired, 334 singletons, 7035 discordant, 179856 orphans, 7829 too large [>5000 bp], 11866116 duplicates)
Reads: 72768455 total, 62946 skipped (flags/unmapped)
Fragments: 36513951 total (36014923 tlen-paired, 1552 hash-paired, 288 singletons, 93405 discordant, 403783 orphans, 40839 too large [>5000 bp], 13516327 duplicates)
Reads: 72467862 total, 44419 skipped (flags/unmapped)
Fragments: 36308638 total (36073364 tlen-paired, 4303 hash-paired, 251 singletons, 9910 discordant, 220810 orphans, 13614 too large [>5000 bp], 13413251 duplicates)