Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_djb-N1-BDNA-2_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_djb-N1-BDNA-2_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_djb-N1-BDNA-2_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_djb-N1-BDNA-2_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86227467 total, 60308 skipped (flags/unmapped)
Fragments: 43217482 total (42906980 tlen-paired, 3770 hash-paired, 489 singletons, 16901 discordant, 289342 orphans, 11013 too large [>5000 bp], 17724067 duplicates)
Reads: 91609280 total, 52752 skipped (flags/unmapped)
Fragments: 45909552 total (45605815 tlen-paired, 3646 hash-paired, 483 singletons, 11485 discordant, 288123 orphans, 13015 too large [>5000 bp], 18453077 duplicates)
Reads: 101311001 total, 59301 skipped (flags/unmapped)
Fragments: 50778096 total (50383664 tlen-paired, 8623 hash-paired, 375 singletons, 17889 discordant, 367545 orphans, 31714 too large [>5000 bp], 20979118 duplicates)
Reads: 101986504 total, 85317 skipped (flags/unmapped)
Fragments: 51209363 total (50410571 tlen-paired, 3352 hash-paired, 401 singletons, 150293 discordant, 644746 orphans, 63804 too large [>5000 bp], 21186061 duplicates)