Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_85P-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_85P-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_85P-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

The index file is older than the data file: 1136_85P-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64926486 total, 52754 skipped (flags/unmapped)
Fragments: 32531558 total (32301729 tlen-paired, 3150 hash-paired, 293 singletons, 14903 discordant, 211483 orphans, 11196 too large [>5000 bp], 10803870 duplicates)
Reads: 75864223 total, 63743 skipped (flags/unmapped)
Fragments: 38076937 total (37543421 tlen-paired, 1709 hash-paired, 340 singletons, 96373 discordant, 435094 orphans, 41020 too large [>5000 bp], 12764678 duplicates)
Reads: 76417499 total, 47433 skipped (flags/unmapped)
Fragments: 38294504 total (38028653 tlen-paired, 3133 hash-paired, 335 singletons, 15288 discordant, 247095 orphans, 14244 too large [>5000 bp], 12803876 duplicates)
Reads: 69830929 total, 40773 skipped (flags/unmapped)
Fragments: 34991465 total (34767849 tlen-paired, 2552 hash-paired, 382 singletons, 10692 discordant, 209990 orphans, 8799 too large [>5000 bp], 11457796 duplicates)