Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_ecd-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_ecd-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_ecd-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ecd-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70301515 total, 40851 skipped (flags/unmapped)
Fragments: 35229608 total (34974733 tlen-paired, 2817 hash-paired, 241 singletons, 11398 discordant, 240419 orphans, 21054 too large [>5000 bp], 13221962 duplicates)
Reads: 65560850 total, 46705 skipped (flags/unmapped)
Fragments: 32848905 total (32633219 tlen-paired, 2884 hash-paired, 301 singletons, 12963 discordant, 199538 orphans, 8087 too large [>5000 bp], 12245791 duplicates)
Reads: 70902361 total, 38556 skipped (flags/unmapped)
Fragments: 35522832 total (35310446 tlen-paired, 2687 hash-paired, 353 singletons, 9194 discordant, 200152 orphans, 9323 too large [>5000 bp], 12974244 duplicates)
Reads: 77487287 total, 67422 skipped (flags/unmapped)
Fragments: 38877318 total (38354991 tlen-paired, 2730 hash-paired, 278 singletons, 99020 discordant, 420299 orphans, 42903 too large [>5000 bp], 14617957 duplicates)