Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7OW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7OW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7OW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7OW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80422534 total, 52971 skipped (flags/unmapped)
Fragments: 40303459 total (40027774 tlen-paired, 3539 hash-paired, 464 singletons, 14535 discordant, 257147 orphans, 10128 too large [>5000 bp], 15642995 duplicates)
Reads: 87079461 total, 48551 skipped (flags/unmapped)
Fragments: 43635422 total (43359825 tlen-paired, 3297 hash-paired, 471 singletons, 9982 discordant, 261847 orphans, 11192 too large [>5000 bp], 16529750 duplicates)
Reads: 86598849 total, 49519 skipped (flags/unmapped)
Fragments: 43402206 total (43093731 tlen-paired, 5714 hash-paired, 352 singletons, 12081 discordant, 290328 orphans, 17799 too large [>5000 bp], 16931338 duplicates)
Reads: 95461119 total, 76023 skipped (flags/unmapped)
Fragments: 47924101 total (47199702 tlen-paired, 2680 hash-paired, 418 singletons, 139159 discordant, 582142 orphans, 59727 too large [>5000 bp], 18741802 duplicates)