Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5AC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_5AC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_5AC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5AC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88142909 total, 62248 skipped (flags/unmapped)
Fragments: 44151658 total (43885268 tlen-paired, 3276 hash-paired, 515 singletons, 17041 discordant, 245558 orphans, 11709 too large [>5000 bp], 16530086 duplicates)
Reads: 94208412 total, 52497 skipped (flags/unmapped)
Fragments: 47187948 total (46928476 tlen-paired, 3991 hash-paired, 440 singletons, 11742 discordant, 243299 orphans, 11879 too large [>5000 bp], 17467575 duplicates)
Reads: 104222945 total, 86932 skipped (flags/unmapped)
Fragments: 52271120 total (51645219 tlen-paired, 3374 hash-paired, 423 singletons, 114488 discordant, 507616 orphans, 50906 too large [>5000 bp], 19803668 duplicates)
Reads: 103671445 total, 56206 skipped (flags/unmapped)
Fragments: 51936254 total (51602741 tlen-paired, 5410 hash-paired, 362 singletons, 17136 discordant, 310605 orphans, 26849 too large [>5000 bp], 19627926 duplicates)