Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_IWL-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_IWL-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IWL-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IWL-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82441250 total, 58515 skipped (flags/unmapped)
Fragments: 41309509 total (41035480 tlen-paired, 3624 hash-paired, 381 singletons, 13332 discordant, 256692 orphans, 10395 too large [>5000 bp], 16203382 duplicates)
Reads: 88984207 total, 50090 skipped (flags/unmapped)
Fragments: 44588111 total (44312128 tlen-paired, 2774 hash-paired, 406 singletons, 9550 discordant, 263253 orphans, 10777 too large [>5000 bp], 17079062 duplicates)
Reads: 88778141 total, 53712 skipped (flags/unmapped)
Fragments: 44492998 total (44167642 tlen-paired, 3271 hash-paired, 375 singletons, 12024 discordant, 309686 orphans, 24247 too large [>5000 bp], 17513140 duplicates)
Reads: 97745181 total, 81892 skipped (flags/unmapped)
Fragments: 49064966 total (48332137 tlen-paired, 2395 hash-paired, 423 singletons, 142205 discordant, 587806 orphans, 60793 too large [>5000 bp], 19360471 duplicates)