Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6EI-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6EI-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6EI-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6EI-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69615354 total, 53821 skipped (flags/unmapped)
Fragments: 34916780 total (34608329 tlen-paired, 2549 hash-paired, 381 singletons, 15109 discordant, 290412 orphans, 9383 too large [>5000 bp], 14224490 duplicates)
Reads: 73957886 total, 47501 skipped (flags/unmapped)
Fragments: 37090455 total (36783296 tlen-paired, 2163 hash-paired, 436 singletons, 10201 discordant, 294359 orphans, 12135 too large [>5000 bp], 14761258 duplicates)
Reads: 81711590 total, 53165 skipped (flags/unmapped)
Fragments: 40986838 total (40614640 tlen-paired, 3000 hash-paired, 339 singletons, 14625 discordant, 354234 orphans, 19661 too large [>5000 bp], 16715081 duplicates)
Reads: 82378111 total, 76390 skipped (flags/unmapped)
Fragments: 41426032 total (40571963 tlen-paired, 4111 hash-paired, 332 singletons, 162083 discordant, 687543 orphans, 68766 too large [>5000 bp], 16881578 duplicates)