Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5ZG-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_5ZG-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_5ZG-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5ZG-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 115004882 total, 87684 skipped (flags/unmapped)
Fragments: 57626267 total (57234201 tlen-paired, 5609 hash-paired, 524 singletons, 23173 discordant, 362760 orphans, 13974 too large [>5000 bp], 24909829 duplicates)
Reads: 122788389 total, 67772 skipped (flags/unmapped)
Fragments: 61528168 total (61141900 tlen-paired, 4143 hash-paired, 656 singletons, 15992 discordant, 365477 orphans, 15207 too large [>5000 bp], 26159857 duplicates)
Reads: 135782543 total, 120828 skipped (flags/unmapped)
Fragments: 68151435 total (67174507 tlen-paired, 4816 hash-paired, 576 singletons, 180995 discordant, 790541 orphans, 74981 too large [>5000 bp], 29672720 duplicates)
Reads: 135475618 total, 77905 skipped (flags/unmapped)
Fragments: 67887978 total (67417692 tlen-paired, 6694 hash-paired, 522 singletons, 23729 discordant, 439341 orphans, 30810 too large [>5000 bp], 29503673 duplicates)