Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1WZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1WZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1WZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1WZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68833028 total, 51325 skipped (flags/unmapped)
Fragments: 34476761 total (34273498 tlen-paired, 2709 hash-paired, 378 singletons, 11753 discordant, 188423 orphans, 8491 too large [>5000 bp], 13164366 duplicates)
Reads: 74319759 total, 43293 skipped (flags/unmapped)
Fragments: 37223456 total (37023083 tlen-paired, 3444 hash-paired, 435 singletons, 8301 discordant, 188193 orphans, 9091 too large [>5000 bp], 13868586 duplicates)
Reads: 81491097 total, 69223 skipped (flags/unmapped)
Fragments: 40873563 total (40371015 tlen-paired, 2673 hash-paired, 350 singletons, 92605 discordant, 406920 orphans, 41009 too large [>5000 bp], 15724449 duplicates)
Reads: 81051630 total, 48157 skipped (flags/unmapped)
Fragments: 40601092 total (40355402 tlen-paired, 3074 hash-paired, 324 singletons, 11775 discordant, 230517 orphans, 16065 too large [>5000 bp], 15564055 duplicates)