Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IYD-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IYD-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IYD-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IYD-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70424973 total, 54464 skipped (flags/unmapped)
Fragments: 35275742 total (35059197 tlen-paired, 3282 hash-paired, 330 singletons, 12338 discordant, 200595 orphans, 9975 too large [>5000 bp], 13229450 duplicates)
Reads: 75392790 total, 41330 skipped (flags/unmapped)
Fragments: 37769341 total (37555418 tlen-paired, 2223 hash-paired, 404 singletons, 8168 discordant, 203128 orphans, 8155 too large [>5000 bp], 13886352 duplicates)
Reads: 82583359 total, 71460 skipped (flags/unmapped)
Fragments: 41436269 total (40882537 tlen-paired, 2176 hash-paired, 373 singletons, 102017 discordant, 449166 orphans, 44450 too large [>5000 bp], 15622101 duplicates)
Reads: 82373173 total, 48007 skipped (flags/unmapped)
Fragments: 41269321 total (40994474 tlen-paired, 3897 hash-paired, 386 singletons, 11782 discordant, 258782 orphans, 22846 too large [>5000 bp], 15515427 duplicates)