Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_I7E-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I7E-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I7E-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I7E-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81615366 total, 64304 skipped (flags/unmapped)
Fragments: 40934249 total (40577408 tlen-paired, 4742 hash-paired, 423 singletons, 14289 discordant, 337387 orphans, 10187 too large [>5000 bp], 16988181 duplicates)
Reads: 87644925 total, 58338 skipped (flags/unmapped)
Fragments: 43966722 total (43577069 tlen-paired, 2718 hash-paired, 373 singletons, 12536 discordant, 374026 orphans, 13771 too large [>5000 bp], 18248626 duplicates)
Reads: 87427877 total, 55682 skipped (flags/unmapped)
Fragments: 43852442 total (43484622 tlen-paired, 3385 hash-paired, 463 singletons, 10608 discordant, 353364 orphans, 10569 too large [>5000 bp], 17721489 duplicates)
Reads: 97329850 total, 91854 skipped (flags/unmapped)
Fragments: 48951927 total (47904635 tlen-paired, 3411 hash-paired, 421 singletons, 207839 discordant, 835621 orphans, 85092 too large [>5000 bp], 20259517 duplicates)