Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_buj-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_buj-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_buj-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_buj-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90171896 total, 66276 skipped (flags/unmapped)
Fragments: 45173646 total (44889981 tlen-paired, 3753 hash-paired, 438 singletons, 17708 discordant, 261766 orphans, 10266 too large [>5000 bp], 16612641 duplicates)
Reads: 96868436 total, 59438 skipped (flags/unmapped)
Fragments: 48522515 total (48241022 tlen-paired, 5461 hash-paired, 539 singletons, 12580 discordant, 262913 orphans, 13710 too large [>5000 bp], 17596011 duplicates)
Reads: 106121170 total, 89471 skipped (flags/unmapped)
Fragments: 53234770 total (52565989 tlen-paired, 3336 hash-paired, 454 singletons, 122354 discordant, 542637 orphans, 52625 too large [>5000 bp], 19748071 duplicates)
Reads: 105190040 total, 63106 skipped (flags/unmapped)
Fragments: 52699452 total (52341506 tlen-paired, 6653 hash-paired, 434 singletons, 19011 discordant, 331848 orphans, 30156 too large [>5000 bp], 19467675 duplicates)