Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4TI-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_4TI-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_4TI-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4TI-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67570567 total, 54884 skipped (flags/unmapped)
Fragments: 33859240 total (33618309 tlen-paired, 3326 hash-paired, 338 singletons, 14896 discordant, 222371 orphans, 9956 too large [>5000 bp], 12944524 duplicates)
Reads: 72806753 total, 46328 skipped (flags/unmapped)
Fragments: 36483835 total (36242161 tlen-paired, 3535 hash-paired, 363 singletons, 9912 discordant, 227864 orphans, 10491 too large [>5000 bp], 13683198 duplicates)
Reads: 79251288 total, 48431 skipped (flags/unmapped)
Fragments: 39715386 total (39447710 tlen-paired, 3286 hash-paired, 259 singletons, 14077 discordant, 250054 orphans, 11199 too large [>5000 bp], 15279071 duplicates)
Reads: 79723838 total, 73800 skipped (flags/unmapped)
Fragments: 40021260 total (39422891 tlen-paired, 2599 hash-paired, 327 singletons, 111354 discordant, 484089 orphans, 45967 too large [>5000 bp], 15387590 duplicates)