Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cfy-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cfy-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cfy-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cfy-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68646402 total, 53555 skipped (flags/unmapped)
Fragments: 34388702 total (34166480 tlen-paired, 3135 hash-paired, 288 singletons, 12368 discordant, 206431 orphans, 11081 too large [>5000 bp], 12782641 duplicates)
Reads: 73335611 total, 44143 skipped (flags/unmapped)
Fragments: 36740095 total (36520768 tlen-paired, 3099 hash-paired, 391 singletons, 8422 discordant, 207415 orphans, 9542 too large [>5000 bp], 13398986 duplicates)
Reads: 80465855 total, 47020 skipped (flags/unmapped)
Fragments: 40315822 total (40033347 tlen-paired, 2936 hash-paired, 310 singletons, 12856 discordant, 266373 orphans, 26937 too large [>5000 bp], 15056074 duplicates)
Reads: 80554058 total, 71422 skipped (flags/unmapped)
Fragments: 40424525 total (39860169 tlen-paired, 3035 hash-paired, 351 singletons, 104603 discordant, 456367 orphans, 45152 too large [>5000 bp], 15124592 duplicates)