Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eZ4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eZ4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eZ4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eZ4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 99610733 total, 71749 skipped (flags/unmapped)
Fragments: 49921137 total (49569945 tlen-paired, 4624 hash-paired, 510 singletons, 21266 discordant, 324792 orphans, 11006 too large [>5000 bp], 19083474 duplicates)
Reads: 108211651 total, 57905 skipped (flags/unmapped)
Fragments: 54227237 total (53881728 tlen-paired, 3592 hash-paired, 611 singletons, 15347 discordant, 325959 orphans, 12921 too large [>5000 bp], 20321005 duplicates)
Reads: 106480455 total, 62686 skipped (flags/unmapped)
Fragments: 53367719 total (52971080 tlen-paired, 3766 hash-paired, 476 singletons, 18642 discordant, 373755 orphans, 28281 too large [>5000 bp], 20530077 duplicates)
Reads: 117672531 total, 99717 skipped (flags/unmapped)
Fragments: 59057988 total (58212947 tlen-paired, 3950 hash-paired, 485 singletons, 158799 discordant, 681807 orphans, 69565 too large [>5000 bp], 22791657 duplicates)