Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_5V3-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_5V3-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5V3-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5V3-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70694629 total, 55594 skipped (flags/unmapped)
Fragments: 35441716 total (35161520 tlen-paired, 3557 hash-paired, 376 singletons, 11360 discordant, 264903 orphans, 10441 too large [>5000 bp], 14795769 duplicates)
Reads: 75131551 total, 44821 skipped (flags/unmapped)
Fragments: 37671127 total (37384671 tlen-paired, 1818 hash-paired, 388 singletons, 7626 discordant, 276624 orphans, 10744 too large [>5000 bp], 15344054 duplicates)
Reads: 83486797 total, 82054 skipped (flags/unmapped)
Fragments: 41970948 total (41131494 tlen-paired, 3646 hash-paired, 396 singletons, 161527 discordant, 673885 orphans, 68564 too large [>5000 bp], 17479821 duplicates)
Reads: 82868887 total, 50326 skipped (flags/unmapped)
Fragments: 41554728 total (41203153 tlen-paired, 4294 hash-paired, 297 singletons, 11732 discordant, 335252 orphans, 22327 too large [>5000 bp], 17362290 duplicates)