Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4ZB-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4ZB-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_4ZB-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_4ZB-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82004622 total, 56780 skipped (flags/unmapped)
Fragments: 41088799 total (40812789 tlen-paired, 3793 hash-paired, 323 singletons, 15327 discordant, 256567 orphans, 13567 too large [>5000 bp], 15718858 duplicates)
Reads: 87674445 total, 44030 skipped (flags/unmapped)
Fragments: 43934837 total (43661944 tlen-paired, 2733 hash-paired, 381 singletons, 10445 discordant, 259334 orphans, 10228 too large [>5000 bp], 16503293 duplicates)
Reads: 96770358 total, 74789 skipped (flags/unmapped)
Fragments: 48581767 total (47866893 tlen-paired, 1999 hash-paired, 320 singletons, 133860 discordant, 578695 orphans, 55525 too large [>5000 bp], 18727602 duplicates)
Reads: 96498128 total, 51514 skipped (flags/unmapped)
Fragments: 48360944 total (48031163 tlen-paired, 3773 hash-paired, 320 singletons, 15400 discordant, 310288 orphans, 17667 too large [>5000 bp], 18597364 duplicates)