Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BMFL-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BMFL-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BMFL-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BMFL-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 97167796 total, 70993 skipped (flags/unmapped)
Fragments: 48674684 total (48367059 tlen-paired, 4088 hash-paired, 490 singletons, 19378 discordant, 283669 orphans, 15797 too large [>5000 bp], 19198069 duplicates)
Reads: 103754655 total, 58555 skipped (flags/unmapped)
Fragments: 51976603 total (51676667 tlen-paired, 2584 hash-paired, 554 singletons, 13078 discordant, 283720 orphans, 13584 too large [>5000 bp], 20158880 duplicates)
Reads: 114724140 total, 96021 skipped (flags/unmapped)
Fragments: 57551275 total (56824962 tlen-paired, 2759 hash-paired, 432 singletons, 132971 discordant, 590151 orphans, 58076 too large [>5000 bp], 22850408 duplicates)
Reads: 113954801 total, 64896 skipped (flags/unmapped)
Fragments: 57091925 total (56728522 tlen-paired, 5504 hash-paired, 472 singletons, 19964 discordant, 337463 orphans, 21995 too large [>5000 bp], 22593897 duplicates)