Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_d0M-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_d0M-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_d0M-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_d0M-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79691728 total, 43133 skipped (flags/unmapped)
Fragments: 39939475 total (39676769 tlen-paired, 2293 hash-paired, 451 singletons, 10338 discordant, 249624 orphans, 9860 too large [>5000 bp], 15149530 duplicates)
Reads: 74914406 total, 55713 skipped (flags/unmapped)
Fragments: 37541207 total (37273286 tlen-paired, 3793 hash-paired, 274 singletons, 15447 discordant, 248407 orphans, 12480 too large [>5000 bp], 14538515 duplicates)
Reads: 88484121 total, 71797 skipped (flags/unmapped)
Fragments: 44429376 total (43739759 tlen-paired, 2155 hash-paired, 316 singletons, 129458 discordant, 557688 orphans, 55788 too large [>5000 bp], 17331445 duplicates)
Reads: 87757973 total, 51800 skipped (flags/unmapped)
Fragments: 43983898 total (43661867 tlen-paired, 7143 hash-paired, 314 singletons, 15341 discordant, 299233 orphans, 18962 too large [>5000 bp], 17120016 duplicates)