Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BF84-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BF84-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BF84-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BF84-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76189669 total, 47349 skipped (flags/unmapped)
Fragments: 38205086 total (37905596 tlen-paired, 3268 hash-paired, 373 singletons, 8190 discordant, 287659 orphans, 10090 too large [>5000 bp], 15595386 duplicates)
Reads: 71284859 total, 52259 skipped (flags/unmapped)
Fragments: 35745263 total (35453649 tlen-paired, 3303 hash-paired, 345 singletons, 11581 discordant, 276385 orphans, 9402 too large [>5000 bp], 14954076 duplicates)
Reads: 83994075 total, 49941 skipped (flags/unmapped)
Fragments: 42125973 total (41777448 tlen-paired, 5523 hash-paired, 281 singletons, 11940 discordant, 330781 orphans, 11625 too large [>5000 bp], 17623002 duplicates)
Reads: 84228881 total, 74860 skipped (flags/unmapped)
Fragments: 42357767 total (41483556 tlen-paired, 3061 hash-paired, 335 singletons, 167769 discordant, 703046 orphans, 70934 too large [>5000 bp], 17694025 duplicates)