Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7PW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7PW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7PW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7PW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66435008 total, 45122 skipped (flags/unmapped)
Fragments: 33296252 total (33060961 tlen-paired, 3373 hash-paired, 388 singletons, 12834 discordant, 218696 orphans, 8233 too large [>5000 bp], 13094589 duplicates)
Reads: 71302200 total, 41348 skipped (flags/unmapped)
Fragments: 35731155 total (35497906 tlen-paired, 2751 hash-paired, 468 singletons, 8832 discordant, 221198 orphans, 10104 too large [>5000 bp], 13692703 duplicates)
Reads: 78592793 total, 42239 skipped (flags/unmapped)
Fragments: 39391674 total (39100304 tlen-paired, 2580 hash-paired, 302 singletons, 13384 discordant, 275104 orphans, 21306 too large [>5000 bp], 15557345 duplicates)
Reads: 79059356 total, 64977 skipped (flags/unmapped)
Fragments: 39694032 total (39086930 tlen-paired, 2035 hash-paired, 288 singletons, 113960 discordant, 490819 orphans, 48711 too large [>5000 bp], 15701420 duplicates)