Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1EO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1EO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1EO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1EO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84332111 total, 63057 skipped (flags/unmapped)
Fragments: 42230021 total (41994491 tlen-paired, 4585 hash-paired, 411 singletons, 14923 discordant, 215611 orphans, 12517 too large [>5000 bp], 15248154 duplicates)
Reads: 90726924 total, 48484 skipped (flags/unmapped)
Fragments: 45437132 total (45207889 tlen-paired, 2875 hash-paired, 488 singletons, 10002 discordant, 215878 orphans, 10271 too large [>5000 bp], 16150355 duplicates)
Reads: 98860543 total, 80382 skipped (flags/unmapped)
Fragments: 49568794 total (49022515 tlen-paired, 2787 hash-paired, 380 singletons, 99173 discordant, 443939 orphans, 43446 too large [>5000 bp], 18080210 duplicates)
Reads: 98998043 total, 54909 skipped (flags/unmapped)
Fragments: 49584529 total (49302831 tlen-paired, 4378 hash-paired, 412 singletons, 15084 discordant, 261824 orphans, 18156 too large [>5000 bp], 18011693 duplicates)