Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4DO-N2-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_4DO-N2-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_4DO-N2-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4DO-N2-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68748522 total, 48230 skipped (flags/unmapped)
Fragments: 34470456 total (34193706 tlen-paired, 2963 hash-paired, 329 singletons, 15463 discordant, 257995 orphans, 8852 too large [>5000 bp], 13024148 duplicates)
Reads: 73993304 total, 43918 skipped (flags/unmapped)
Fragments: 37104235 total (36783698 tlen-paired, 3957 hash-paired, 325 singletons, 13554 discordant, 302701 orphans, 21971 too large [>5000 bp], 14086181 duplicates)
Reads: 74429003 total, 42253 skipped (flags/unmapped)
Fragments: 37315942 total (37038349 tlen-paired, 2044 hash-paired, 428 singletons, 10991 discordant, 264130 orphans, 9712 too large [>5000 bp], 13748591 duplicates)
Reads: 81567424 total, 70250 skipped (flags/unmapped)
Fragments: 40976698 total (40267076 tlen-paired, 1615 hash-paired, 350 singletons, 135805 discordant, 571852 orphans, 57990 too large [>5000 bp], 15558678 duplicates)