Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3LU-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_3LU-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_3LU-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3LU-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77348462 total, 50250 skipped (flags/unmapped)
Fragments: 38755912 total (38498129 tlen-paired, 2523 hash-paired, 388 singletons, 15994 discordant, 238878 orphans, 12827 too large [>5000 bp], 13920243 duplicates)
Reads: 83073439 total, 43301 skipped (flags/unmapped)
Fragments: 41624431 total (41372877 tlen-paired, 2437 hash-paired, 430 singletons, 11099 discordant, 237588 orphans, 9647 too large [>5000 bp], 14658152 duplicates)
Reads: 82902131 total, 45590 skipped (flags/unmapped)
Fragments: 41548649 total (41244248 tlen-paired, 4053 hash-paired, 291 singletons, 14419 discordant, 285638 orphans, 22586 too large [>5000 bp], 15004098 duplicates)
Reads: 90932950 total, 69557 skipped (flags/unmapped)
Fragments: 45631190 total (45015100 tlen-paired, 2682 hash-paired, 367 singletons, 116315 discordant, 496726 orphans, 49053 too large [>5000 bp], 16572086 duplicates)