Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cAa-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cAa-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cAa-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cAa-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84094776 total, 60096 skipped (flags/unmapped)
Fragments: 42142560 total (41850151 tlen-paired, 3142 hash-paired, 406 singletons, 18351 discordant, 270510 orphans, 10238 too large [>5000 bp], 15616622 duplicates)
Reads: 90561538 total, 48910 skipped (flags/unmapped)
Fragments: 45381618 total (45092755 tlen-paired, 3215 hash-paired, 400 singletons, 13040 discordant, 272208 orphans, 11000 too large [>5000 bp], 16523787 duplicates)
Reads: 89459900 total, 58429 skipped (flags/unmapped)
Fragments: 44834074 total (44507760 tlen-paired, 6437 hash-paired, 328 singletons, 15226 discordant, 304323 orphans, 18987 too large [>5000 bp], 16738500 duplicates)
Reads: 98816109 total, 78781 skipped (flags/unmapped)
Fragments: 49598011 total (48892225 tlen-paired, 3656 hash-paired, 323 singletons, 133362 discordant, 568445 orphans, 55037 too large [>5000 bp], 18539637 duplicates)